The web application AISMIG (An Interactive Server-side Molecule Image Generator) is a new way of molecule image generation.

ALINE is a protein-sequence alignment editor for publication-quality alignments.

Robert Esnouf's extensions to MolScript (v 1.4) including color ramping.

Chimera is an interactive molecular graphics program, which is the successor to UCSF Midas and MidasPlus.

Cn3D is a helper application for your web browser that allows you to view 3-dimensional structures from NCBI's Entrez retrieval service.

Identification of functional regions in proteins by surface-mapping of phylogenetic information.

DINO is a realtime 3D visualization program for structural biology data.

ESPript (Easy Sequencing in Postscript) is a utility to generate a pretty PostScript output from aligned sequences.

GRASP is a molecular visualization and analysis program. It is particularly useful for the display and manipulation of the surfaces of molecules and their electrostatic properties.

Insight II provides a comprehensive, integrated molecular graphics environment for visualization, protein engineering, macromolecular simulations, homology modeling, and de novo ligand design, enabling researchers to gain early insights into the structure and function of their targets of interest.

Jmol is a free, cross-platform, open source molecule viewer for students, educators, and researchers in chemistry and biochemistry.

A "kinemage" (kinetic image) is a scientific illustration presented as an interactive computer display.

KiNG (Kinemage, Next Generation) is an interactive system for three-dimensional vector graphics.

LIGPLOT automatically generates diagrams of protein-ligand interactions from a PDB file.

Web service for all-atom contact and geometrical analysis of your model.

MolScript is a program for displaying molecular 3D structures, such as proteins, in both schematic and detailed representations.

NUCPLOT generate schematic diagrams of protein-nucleic acid interactions from a given PDB file.

Protein Movie Generator (PMG) is a service that can generate pictures and movies of protein structures.

PyMOL is a molecular viewer with the ability to generate high-quality rendered images for publication or animations, as well as other common molecular graphics activities to support crystallography.

RasMol is a molecular graphics program intended for the visualisation of proteins, nucleic acids and small molecules.

RasTop is a molecular visualization software derived from Rasmol.

Raster3D is a set of tools for generating high quality raster images of proteins or other molecules.

The Ribbons software interactively displays molecular models, analyzes crystallographic results, and creates publication quality images.

SETOR is designed to allow the display of secondary, tertiary and quaternary structures of protein and nucleic acid macromolecules, and to allow a wide variety of rendering models to be used.

SYBYL is a suite of computational informatics software designed to enhance the drug discovery workflows and decision-making of today's computational chemists and molecular modelers.

A web based GUI to generate and visualize the macromolecules.

This service allows you to submit a protein structure for calculation of the topology cartoon.

VMD (Visual Molecular Dynamics) is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.