Structural Biology Planet

POODLE

Description

POODLE (Prediction Of Order and Disorder by machine LEarning) is a system that predicts disorder regions using amino acid sequence alone. The POODLE system consists of three predictions, short disorder regions prediction, long disorder regions prediction and unfolded protein prediction.

Documentation, Other Resources

Main Website

Documentation

Citation

S. Hirose, K. Shimizu, S. Kanai, Y. Kuroda and T. Noguchi "POODLE-L: a two-level SVM preidction system for reliably predicting long disordered regions" , Bioinformatics 2007 23(16) 2046-53.

K. Shimizu, S. Hirose, and T. Noguchi "POODLE-S: web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position-specific matirx" , Bioinformatics 2007 23(17):2337-8.

K. Shimizu, Y. Muraoka, S. Hirose, K. Tomii and T. Noguchi "Predicting mostly disordered proteins by using structure-unknown protein data", BMC Bioinformatics 2007, 8:78.

Last modified: 03/14/08