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Structural > Multipurpose

CCP4
The CCP4 (Collaborative Computational Project Number 4 in Protein Crystallography) program suite is a collection of programs covering most of the computations required for macromolecular crystallography.
CNS
Crystallography & NMR System (CNS) provides convient access to the most commonly used algorithms in macromolecular structure determination.
Uppsala Software Factory (Gerard Kleywegt)
Gerard Kleywegt's site (USF) with programs and other links handy for macromolecular crystallography.